Publications

This page contains the latest publications by the CNS-NRT faculty, trainees, and affiliates.

  1. Wu, Heng‐Yi and Shendre, Aditi and Zhang, Shijun and Zhang, Pengyue and Wang, Lei and Zeruesenay, Desta and Rocha, Luis M. and Shatkay, Hagit and Quinney, Sara K. and Ning, Xia and Li, Lang. (2020). Translational Knowledge Discovery Between Drug Interactions and Pharmacogenetics. Clinical Pharmacology & Therapeutics. 107 (4) 886 to 902. doi:10.1002/cpt.1745
  2. Perry, BL and Yang, KC and Kaminski, P and Odabas, M and Park, J and Martel, M and Oser, C and Talbert, J and Freeman, P and Ahn, YY.(2019). Co-prescription network reveals social dynamics of opioid doctor shopping. PloS one. 14 (10). doi:10.5061/dryad.4xgxd2552
  3. Correia, Rion Brattig and Wood, Ian B. and Bollen, Johan and Rocha, Luis M. (2020). Mining Social Media Data for Biomedical Signals and Health-Related Behavior. Annual Review of Biomedical Data Science. 3 (1) 433 to 458. doi:10.1146/annurev-biodatasci-030320-040844
  4. Benson, Lauren V and Candadai, Madhavun and Izquierdo, Eduardo J. (2020). Neural reuse in multifunctional neural networks for control tasks. Artificial life. 32 210-218.
  5. Paolillo, John and Harper, Brian and Boothby, Clara and Axelrod, David. (2020). YouTube Children’s Videos: Development of a Genre under Algorithm.  Proceedings of the Annual Hawaii International Conference on System Sciences.  doi:10.24251/HICSS.2020.336
  6. Varley, Thomas F. and Craig, Michael and Adapa, Ram and Finoia, Paola and Williams, Guy and Allanson, Judith and Pickard, John and Menon, David K. and Stamatakis, Emmanuel A. and Esteban, Francisco J. (2020). Fractal dimension of cortical functional connectivity networks & severity of disorders of consciousness.  PLOS ONE. 15 (2) e0223812. doi:10.1371/journal.pone.0223812
  7. Varley, Thomas F. and Carhart-Harris, Robin and Roseman, Leor and Menon, David K. and Stamatakis, Emmanuel A. (2020). Serotonergic psychedelics LSD & psilocybin increase the fractal dimension of cortical brain activity in spatial and temporal domains.  NeuroImage. 220 (C) 117049. doi:10.1016/j.neuroimage.2020.117049
  8. Varley, Thomas F. and Luppi, Andrea I. and Pappas, Ioannis and Naci, Lorina and Adapa, Ram and Owen, Adrian M. and Menon, David K. and Stamatakis, Emmanuel A. (2020). Consciousness & Brain Functional Complexity in Propofol Anaesthesia.  Scientific Reports. 10 (1). doi:10.1038/s41598-020-57695-3
  9. Dunivin, Zackary and Zadunayski, Lindsay and Baskota, Ujjwal and Siek, Katie and Mankoff, Jennifer. (2020). Gender, Soft Skills, and Patient Experience in Online Physician Reviews: A Large-Scale Text Analysis. Journal of Medical Internet Research. 22 (7) e14455. doi:10.2196/14455
  10. Pieterman, C R and Sadowski, S M and Maxwell, J E and Katz, M H and Lines, K E and Heaphy, C M and Tirosh, A and Blau, J E and Perrier, N D and Lewis, M A and Metzcar, J P and Halperin, D M and Thakker, R V and Valk, G D. (2020). HEREDITARY ENDOCRINE TUMOURS: CURRENT STATE-OF-THE-ART AND RESEARCH OPPORTUNITIES: MEN1-related pancreatic NETs: identification of unmet clinical needs and future directives.  Endocrine-Related Cancer. 27 (8) T9 to T25. doi:10.1530/ERC-19-0441

 

  1. Perry, BL and Yang, KC and Kaminski, P and Odabas, M and Park, J and Martel, M and Oser, C and Talbert, J and Freeman, P and Ahn, YY. (2019). Co-prescription network reveals social dynamics of opioid doctor shopping. PloS one. 14 (10).  doi:10.5061/dryad.4xgxd2552
  2. Metzcar, John and Wang, Yafei and Heiland, Randy and Macklin, Paul. (2019). A Review of Cell-Based Computational Modeling in Cancer Biology. JCO Clinical Cancer Informatics.  (3) 1 to 13.  doi:10.1200/CCI.18.00069
  3. Yan, Harry Yaojun. (2019). “The Rippled Perceptions”: The Effects of LGBT-Inclusive TV on Own Attitudes and Perceived Attitudes of Peers Toward Lesbians and Gays. Journalism & Mass Communication Quarterly. 96 (3) 848 to 871. doi:10.1177/1077699018821327
  4. Brattig Correia, Rion and de Araújo Kohler, Luciana P. and Mattos, Mauro M. and Rocha, Luis M. (2019). City-wide electronic health records reveal gender and age biases in administration of known drug–drug interactions.  npj Digital Medicine. 2 (1).  doi:10.1038/s41746-019-0141-x
  5. Safron, Adam and Sylva, David and Klimaj, Victoria and Rosenthal, A. M. and Bailey, J. Michael. (2019). Neural Responses to Sexual Stimuli in Heterosexual and Homosexual Men and Women: Men’s Responses Are More Specific. Archives of Sexual Behavior. 1-13.  doi:10.1007/s10508-019-01521-z
  6. McClinton, Kelly E. (2019). Applications of Photogrammetric Modeling to Roman Wall Painting: A Case Study in the House of Marcus Lucretius. Arts. 8 (3) 89. doi:10.3390/arts8030089

  1. A. M. Cohen, Z. O. Dunivin, and N. R. Smalheiser. “A probabilistic automated tagger to identify human-related publications”. Database 2018 (2018), pp. 1–8. doi: 10.1093/database/bay079.
  2. R. B. Correia, A. J. Gates, X. Wang, and L. M. Rocha. “CANA: A Python Package for Quantifying Control and Canalization in Boolean Networks”. Frontiers in Physiology 9 (2018), p. 1046. doi: 10.3389/fphys.2018.01046.
  3. B. L. Perry, P. Kaminski, Y.Y. Ahn, C. Oser, P. R. Freeman, M. Martel, J. Park, and J. Talbert. “Prominence in a large co-prescription network as an indicator of doctor shopping for prescription opioids”. Drug and Alcohol Dependence (2018). Under review.
  4. Barron, Alexander T. and Huang, Jenny and Spang, Rebecca L. and DeDeo, Simon. (2018). Individuals, institutions, and innovation in the debates of the French Revolution. Proceedings of the National Academy of Sciences.   doi:10.1073/pnas.1717729115

  1. R. Correia, N. Ratkiewicz, A. Barrat, and L. Rocha. The Metric Backbone of Contact Networks in Epidemic Spread Models. Lightnining Talk at NetSci 2018: International School and Conference on Networks Science. Paris, France June 11-15, 2018. 2018. url: https://www.netsci2018.com.
  2. R. B. Correia and L. M. Rocha. Towards understanding the multi-level complexity of human health. Poster presented at the Research Showcase of the NSF-NRT Interdisciplinary Training in Complex Networks and Systems. 2018.
  3. Z. Dunivin. Measuring Individual Rhetorical Change in the White Nationalist Discourse on Twitter. Talk at the Santa Fe Institute Graduate Workshop in Computational Social Science and Complexity, June, 2018. 2018.
  4. Z. Dunivin, V. Wong, and F. Menczer. Progressive Involvement in the White Nationalist Discourse on Dynamic Networks. Poster presented at the Research Showcase of the NSF-NRT Interdisciplinary Training in Complex Networks and Systems. 2018.
  5. Y. Ju. Footstep Detection with HoloLens. Poster presented at the Research Showcase of the NSF-NRT Interdisciplinary Training in Complex Networks and Systems. 2018.
  6. P. Kaminski, Y. Y. Ahn, and B. Perry. Drugs, Dealers and Healers: Network Positions of Physicians in Opioid Prescription Networks. Poster presented at the Research Showcase of the NSF-NRT Interdisciplinary Training in Complex Networks and Systems. 2018.
  7. P. Kaminski, B. L. Perry, Y.-Y. Ahn, and C. Oser. Drugs, Dealers, and Healers: Network Positions of Physicians in Opioid Prescription Networks. Talk at the XXXVIII Sunbelt Conference, Utrecht, The Netherlands, June 26-July 1, 2018. 2018.
  8. H. Marahrens, S. Regas, and P. Kaminski. Omnivorousness as a Precondition for Specific and Obscure Tastes. Poster presented at the 4th Annual International Conference on Computational Social Science (IC2S2 2018). 2018.
  9. K. McClinton, B. Fischer, and L. M. Rocha. The Social Logic of Space: Analyzing Patterns of Access in Pompeii. Talk presented at the Digital Humanities for Academic and Curatorial Practice Conference, Rome, May 23-24, 2018. 2018.
  10. K. McClinton, B. Fischer, and L. M. Rocha. The Social Logic of Space: Analyzing Patterns of Access in Pompeii. Talk presented at 19th International Congress of Classical Archaeology, Cologne/Bonn, 22 – 26 May 2018. 2018.
  11. K. McClinton, B. Fischer, and L. M. Rocha. The Social Logic of Space: Analyzing Patterns of Access in Pompeii. Poster presented at the Research Showcase of the NSF-NRT Interdisciplinary Training in Complex Networks and Systems. 2018.
  12. F. Miscevic, A. Avena-Koenigsberger, M. Á. Serrano, A. Griffa, and O. Sporns. Navigability of structural brain networks in hyperbolic space. Talk at NetSci 2018: International School and Conference on Networks Science. Paris, France June 11-15, 2018. 2018. url: https://www.netsci2018.com/posters.
  13. F. Miscevic, L. M. Rocha, and O. Sporns. Navigability of structural brain networks in hyperbolic space. Poster presented at the Research Showcase of the NSF-NRT Interdisciplinary Training in Complex Networks and Systems. 2018.
B. Perry, P. Kaminski, Y. Ahn, J. Park, C. Oser, P. Freeman, and J. Talbert. Patient centrality in an opioid co-prescription network as an indicator of drug abuse and overdose potential. XXXVIII Sunbelt Conference, Utrecht, The Netherlands